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GrainGenes Marker Report: k02291

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Locus	k02291
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 114.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags18l02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = T/C SNP structure (UNICODE) = TGTAGAATACYTCAGTGTCCA Parent 1 SNP sequence = TGTAGAATACTTCAGTGTCCA Parent 2 SNP sequence = TGTAGAATACCTCAGTGTCCA Recognized sequence for CAPs locus = CTNAG
Probe for Locus	bags18l02
Locus	k02291
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0519E12.32 [Oryza sativa (japonica cultivar-group)] dbj BAC07112.1 unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAAAACTCAAGGCCACACC Right 5' - CGACTCCTTGGCTTCTGAAC
Sequence	AV922559
PCR size	353