GrainGenes Marker Report: k02305
Locus
k02305
Type
CAPS
Chromosome
1H
Map
Hv-HNxH602-1H 313.9
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags18o09
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/C SNP structure (UNICODE) = CGTGCTGGCGYTCCAGTAGCC Parent 1 SNP sequence = CGTGCTGGCGTTCCAGTAGCC Parent 2 SNP sequence = CGTGCTGGCGCTCCAGTAGCC Recognized sequence for CAPs locus = GCGC
Probe for Locus
bags18o09
Locus
k02305
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative flavonol 3-sulfotransferase [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AATCCGGTGGTCTTCAACAG
Right 5' - CGGTTCCTTTAGCAAACCTG
Sequence
AV922616
PCR size
420
GrainGenes Marker Report: k02305
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