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GrainGenes Marker Report: k02315

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Locus	k02315
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 31.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags1m23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = AAAAAGAGACRACGTGCACTT Parent 1 SNP sequence = AAAAAGAGACGACGTGCACTT Parent 2 SNP sequence = AAAAAGAGACAACGTGCACTT SNP = A/G SNP structure (UNICODE) = TTTTGCCTTGRCTATCTGGCT Parent 1 SNP sequence = TTTTGCCTTGACTATCTGGCT Parent 2 SNP sequence = TTTTGCCTTGGCTATCTGGCT
Probe for Locus	bags1m23
Locus	k02315
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0421H07.9 [Oryza sativa (japonica cultivar-group)] dbj BAB92281.1 P0421H07.9 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CACGGGATCGATGTCTCTTT Right 5' - GGCTGGAGAAGAGCAGGTACT
Sequence	AV921279
PCR size	363