Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02316

[Submit comment/correction]

Locus	k02316
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 142.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20a01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = T/C SNP structure (UNICODE) = TGATTGGGCGYTTCAAGTGGG Parent 1 SNP sequence = TGATTGGGCGTTTCAAGTGGG Parent 2 SNP sequence = TGATTGGGCGCTTCAAGTGGG SNP = G/T SNP structure (UNICODE) = CATCAAATATKGTCTGATCAG Parent 1 SNP sequence = CATCAAATATGGTCTGATCAG Parent 2 SNP sequence = CATCAAATATTGTCTGATCAG SNP = A/G SNP structure (UNICODE) = GCCGGTAGGCRATGTGCTGGA Parent 1 SNP sequence = GCCGGTAGGCAATGTGCTGGA Parent 2 SNP sequence = GCCGGTAGGCGATGTGCTGGA SNP structure (UNICODE) = GGCATACCGCKGACGACCGGC Parent 1 SNP sequence = GGCATACCGCGGACGACCGGC Parent 2 SNP sequence = GGCATACCGCTGACGACCGGC SNP = C/G SNP structure (UNICODE) = AGAAAAGGACSCGGCATACCG Parent 1 SNP sequence = AGAAAAGGACCCGGCATACCG Parent 2 SNP sequence = AGAAAAGGACGCGGCATACCG
Probe for Locus	bags20a01
Locus	k02316
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj BAA96636.1 unnamed protein product [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - CACAATGCCGAATACTTCCC Right 5' - AGGTGCAGACGAAGGGTATG
Sequence	AV833969
PCR size	363