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GrainGenes Marker Report: k02350

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Locus	k02350
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags1l22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = A/T SNP structure (UNICODE) = GTGTAGCACAWATACAGTTAG Parent 1 SNP sequence = GTGTAGCACAAATACAGTTAG Parent 2 SNP sequence = GTGTAGCACATATACAGTTAG SNP = A/C SNP structure (UNICODE) = TACTGGGCTCMCACTGATGAG Parent 1 SNP sequence = TACTGGGCTCACACTGATGAG Parent 2 SNP sequence = TACTGGGCTCCCACTGATGAG SNP = T/G SNP structure (UNICODE) = AGAAAGTGCTKTACTGGGCTC Parent 1 SNP sequence = AGAAAGTGCTTTACTGGGCTC Parent 2 SNP sequence = AGAAAGTGCTGTACTGGGCTC SNP = A/G SNP structure (UNICODE) = ACTGCATGGCRAATAATGCAG Parent 1 SNP sequence = ACTGCATGGCAAATAATGCAG Parent 2 SNP sequence = ACTGCATGGCGAATAATGCAG SNP structure (UNICODE) = TACTGCCGTAMAGTATATTTA Parent 1 SNP sequence = TACTGCCGTAAAGTATATTTA Parent 2 SNP sequence = TACTGCCGTACAGTATATTTA
Probe for Locus	bags1l22
Locus	k02350
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj BAA92502.1 unnamed protein product [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - CGACCACACCATATTTTGGA Right 5' - AGGAAGGTGCCAAGGTTCTC
Sequence	AV921264
PCR size	397