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GrainGenes Marker Report: k02354

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Locus	k02354
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 257.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags19c10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = A/G SNP structure (UNICODE) = ACGCAAAAAARAGAGTAATAA Parent 1 SNP sequence = ACGCAAAAAAAAGAGTAATAA Parent 2 SNP sequence = ACGCAAAAAAGAGAGTAATAA SNP = T/C SNP structure (UNICODE) = TACAACAGTGYATAAGAAGGC Parent 1 SNP sequence = TACAACAGTGTATAAGAAGGC Parent 2 SNP sequence = TACAACAGTGCATAAGAAGGC SNP = G/C SNP structure (UNICODE) = TTCTTCTTAGSGGCTAAATGA Parent 1 SNP sequence = TTCTTCTTAGGGGCTAAATGA Parent 2 SNP sequence = TTCTTCTTAGCGGCTAAATGA SNP = T/G SNP structure (UNICODE) = ACTTTAAGCAKATGTGCTTAG Parent 1 SNP sequence = ACTTTAAGCATATGTGCTTAG Parent 2 SNP sequence = ACTTTAAGCAGATGTGCTTAG SNP = C/T SNP structure (UNICODE) = TGCAAGCCATYATAGATCTAT Parent 1 SNP sequence = TGCAAGCCATCATAGATCTAT Parent 2 SNP sequence = TGCAAGCCATTATAGATCTAT
Probe for Locus	bags19c10
Locus	k02354
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Contains similarity to RNA-binding protein from Arabidopsis thaliana gi 2129727 and contains RNA recognition PF 00076 domain.
Type	PCR
PCR primers	Left 5' - CTCGACGATAGAGGCACACA Right 5' - AGCTTGACCCTCAGCTTGAA
Sequence	AV921938
PCR size	363