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GrainGenes Marker Report: k02361

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Locus	k02361
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 62
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags1h03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = T/C SNP structure (UNICODE) = GTGGCAAGGCYTGTAGATCTG Parent 1 SNP sequence = GTGGCAAGGCTTGTAGATCTG Parent 2 SNP sequence = GTGGCAAGGCCTGTAGATCTG Recognized sequence for CAPs locus = GGCC
Probe for Locus	bags1h03
Locus	k02361
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = acetyl-CoA carboxylase (EC 6.4.1.2) - wheat gb AAC39330.1 acetyl-coenzyme A carboxylase [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - GAGAAGCCCATACAAGCAGC Right 5' - CTCATGAACATGCCGCTTAC
Sequence	AV921217
PCR size	432