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GrainGenes Marker Report: k02364

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Locus	k02364
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 224.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20b10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MseI SNP = T/A SNP structure (UNICODE) = TACCTGCATGWTAACACAAGG Parent 1 SNP sequence = TACCTGCATGTTAACACAAGG Parent 2 SNP sequence = TACCTGCATGATAACACAAGG Recognized sequence for CAPs locus = TTAA
Probe for Locus	bags20b10
Locus	k02364
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0434B04.5 [Oryza sativa (japonica cultivar-group)] dbj BAB21139.1 P0416D03.27 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGATCGAGTCAACCACTGC Right 5' - GAGGTGTTCGGGCTCAAGTA
Sequence	AV918163
PCR size	481