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GrainGenes Marker Report: k02367

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Locus	k02367
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 168.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags19e06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = C/T SNP structure (UNICODE) = GCGAGTAGATYATTAAGAATT Parent 1 SNP sequence = GCGAGTAGATCATTAAGAATT Parent 2 SNP sequence = GCGAGTAGATTATTAAGAATT Recognized sequence for CAPs locus = GATC
Probe for Locus	bags19e06
Locus	k02367
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = At1g79690/F20B17_11 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CATCCGCAGCTGACAGTAAA Right 5' - TAGCAGGCTATGAAATCCCG
PCR size	369