GrainGenes Marker Report: k02371
Locus
k02371
Type
CAPS
Chromosome
1H
Map
Hv-HNxH602-1H 270.6
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags1a18
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = EcoRV SNP = T/G SNP structure (UNICODE) = TGGAGTTGGAKATCATGCACA Parent 1 SNP sequence = TGGAGTTGGATATCATGCACA Parent 2 SNP sequence = TGGAGTTGGAGATCATGCACA Recognized sequence for CAPs locus = GATATC
Probe for Locus
bags1a18
Locus
k02371
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = Tubulin alpha chain gb AAD10486.1 alpha-tubulin [Triticum aestivum]
Type
PCR
PCR primers
Left 5' - GGCCTCCTTGTTCATTTTCTC
Right 5' - TCAACTTCCTCAGCTCCCTC
Sequence
BQ666000
PCR size
455
GrainGenes Marker Report: k02371
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