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GrainGenes Marker Report: k02387

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Locus	k02387
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 329.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags1p04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/A SNP structure (UNICODE) = AAACTTACTTRGTGCACGACT Parent 1 SNP sequence = AAACTTACTTGGTGCACGACT Parent 2 SNP sequence = AAACTTACTTAGTGCACGACT SNP = A/C SNP structure (UNICODE) = TAATAAATTTMCAAACTCAAA Parent 1 SNP sequence = TAATAAATTTACAAACTCAAA Parent 2 SNP sequence = TAATAAATTTCCAAACTCAAA
Probe for Locus	bags1p04
Locus	k02387
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = histone deacetylase 2 isoform b [Zea mays]
Type	PCR
PCR primers	Left 5' - GGTTTTGTCGTTGACCTCGT Right 5' - CCCACTGAACCACGAGATTT
Sequence	BU976975
PCR size	470