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GrainGenes Marker Report: k02402

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Locus	k02402
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 67.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20d19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 29 ] SNP = A/G SNP structure (UNICODE) = CTATAATGTGRAGGTACATCC Parent 1 SNP sequence = CTATAATGTGAAGGTACATCC Parent 2 SNP sequence = CTATAATGTGGAGGTACATCC SNP = G/A SNP structure (UNICODE) = GCATGGTATCRCCCGTATGCC Parent 1 SNP sequence = GCATGGTATCGCCCGTATGCC Parent 2 SNP sequence = GCATGGTATCACCCGTATGCC SNP structure (UNICODE) = ACTTGCGGAGRACTGCCGATC Parent 1 SNP sequence = ACTTGCGGAGAACTGCCGATC Parent 2 SNP sequence = ACTTGCGGAGGACTGCCGATC SNP = G/C SNP structure (UNICODE) = TCGATTTTTASATTGCTATAA Parent 1 SNP sequence = TCGATTTTTAGATTGCTATAA Parent 2 SNP sequence = TCGATTTTTACATTGCTATAA SNP structure (UNICODE) = GATAGGTGAARCACTGCATGG Parent 1 SNP sequence = GATAGGTGAAGCACTGCATGG Parent 2 SNP sequence = GATAGGTGAAACACTGCATGG SNP = C/G SNP structure (UNICODE) = TCACTGCTCTSCAGATGAAAC Parent 1 SNP sequence = TCACTGCTCTCCAGATGAAAC Parent 2 SNP sequence = TCACTGCTCTGCAGATGAAAC SNP structure (UNICODE) = GAAACTGCCARCACAAAAGAT Parent 1 SNP sequence = GAAACTGCCAACACAAAAGAT Parent 2 SNP sequence = GAAACTGCCAGCACAAAAGAT SNP = T/A SNP structure (UNICODE) = CAAAAGATTGWTTGCTTATTT Parent 1 SNP sequence = CAAAAGATTGTTTGCTTATTT Parent 2 SNP sequence = CAAAAGATTGATTGCTTATTT
Probe for Locus	bags20d19
Locus	k02402
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAF03435.1 hypothetical protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CTGTCACGGGTCACACATTC Right 5' - CATTTCACCCTCGGCTGTAT
Sequence	AV833980
PCR size	412