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GrainGenes Marker Report: k02411

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Locus	k02411
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 123.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags21d11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = GTAAGAAAGARGATTGTCACT Parent 1 SNP sequence = GTAAGAAAGAAGATTGTCACT Parent 2 SNP sequence = GTAAGAAAGAGGATTGTCACT SNP = T/C SNP structure (UNICODE) = TTTTATTTCCYGCTTTGTAAG Parent 1 SNP sequence = TTTTATTTCCTGCTTTGTAAG Parent 2 SNP sequence = TTTTATTTCCCGCTTTGTAAG
Probe for Locus	bags21d11
Locus	k02411
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Putative FH protein interacting protein FIP1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCACTGGTTTGCTCATGC Right 5' - CTGCATCAGGATGGTGAACA
Sequence	AV918483
PCR size	403