Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02425

[Submit comment/correction]

Locus	k02425
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 134.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20c13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = C/A SNP structure (UNICODE) = GGTTATTGCAMATAAAAGTGA Parent 1 SNP sequence = GGTTATTGCACATAAAAGTGA Parent 2 SNP sequence = GGTTATTGCAAATAAAAGTGA SNP = G/T SNP structure (UNICODE) = AACAAATGCAKGAGTTGCAGA Parent 1 SNP sequence = AACAAATGCAGGAGTTGCAGA Parent 2 SNP sequence = AACAAATGCATGAGTTGCAGA SNP = C/G SNP structure (UNICODE) = GATATGTTCCSATGCATTTTT Parent 1 SNP sequence = GATATGTTCCCATGCATTTTT Parent 2 SNP sequence = GATATGTTCCGATGCATTTTT SNP = T/C SNP structure (UNICODE) = TTTATCTCGTYATATGACGCT Parent 1 SNP sequence = TTTATCTCGTTATATGACGCT Parent 2 SNP sequence = TTTATCTCGTCATATGACGCT
Probe for Locus	bags20c13
Locus	k02425
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = RabGAP/TBC domain-containing protein [Arabidopsis thaliana] dbj BAB08757.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATCTCAAATGGGGAGGCTCT Right 5' - GCCTGAGGGTTGGTCAATTA
Sequence	AV833974
PCR size	462