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GrainGenes Marker Report: k02435

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Locus	k02435
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 303.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags21e21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = G/A SNP structure (UNICODE) = GGTGCACACGRGACACATAAC Parent 1 SNP sequence = GGTGCACACGGGACACATAAC Parent 2 SNP sequence = GGTGCACACGAGACACATAAC SNP = C/G SNP structure (UNICODE) = TCTGTGGCTTSGCAGGATCTT Parent 1 SNP sequence = TCTGTGGCTTCGCAGGATCTT Parent 2 SNP sequence = TCTGTGGCTTGGCAGGATCTT SNP = A/C SNP structure (UNICODE) = TCATCATGTCMGCGCCAGATA Parent 1 SNP sequence = TCATCATGTCAGCGCCAGATA Parent 2 SNP sequence = TCATCATGTCCGCGCCAGATA SNP structure (UNICODE) = ACATGTTTGCRGTGTTGAGGT Parent 1 SNP sequence = ACATGTTTGCGGTGTTGAGGT Parent 2 SNP sequence = ACATGTTTGCAGTGTTGAGGT SNP = T/G SNP structure (UNICODE) = TGAAGTGGTCKCGGGGGTGCA Parent 1 SNP sequence = TGAAGTGGTCTCGGGGGTGCA Parent 2 SNP sequence = TGAAGTGGTCGCGGGGGTGCA
Probe for Locus	bags21e21
Locus	k02435
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = initiation factor 3d [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCCTTCAAACACCACTCATCA Right 5' - GACATGATAGGTCGGGGAGA
Sequence	AV918508
PCR size	354