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GrainGenes Marker Report: k02441

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Locus	k02441
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 36.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20i17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = GAATCTTGACRTAGGGCAACA Parent 1 SNP sequence = GAATCTTGACATAGGGCAACA Parent 2 SNP sequence = GAATCTTGACGTAGGGCAACA SNP = G/A SNP structure (UNICODE) = GCCACCATGCRTGTCCCTGCG Parent 1 SNP sequence = GCCACCATGCGTGTCCCTGCG Parent 2 SNP sequence = GCCACCATGCATGTCCCTGCG
Probe for Locus	bags20i17
Locus	k02441
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Acyl-CoA independent ceramide synthase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGCAAAGAGTGCAGAGAGA Right 5' - GCAATAAAAGCGGACGACAT
Sequence	AV833996
PCR size	482