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GrainGenes Marker Report: k02468

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Locus	k02468
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 199.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20p12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BanII SNP = T/G SNP structure (UNICODE) = GCACCCGGGCKCCGACCACGT Parent 1 SNP sequence = GCACCCGGGCTCCGACCACGT Parent 2 SNP sequence = GCACCCGGGCGCCGACCACGT Recognized sequence for CAPs locus = GRGCYC
Probe for Locus	bags20p12
Locus	k02468
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 29 kDa ribonucleoprotein, chloroplast (RNA-binding protein cp29), putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCGATGGTGGGAGATAGATG Right 5' - GCGGTAGCTGACAAAGGTTC
Sequence	AV918413
PCR size	416