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GrainGenes Marker Report: k02478

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Locus	k02478
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 175.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20l05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = T/G SNP structure (UNICODE) = TAACGAGTCAKCCACCGACGG Parent 1 SNP sequence = TAACGAGTCATCCACCGACGG Parent 2 SNP sequence = TAACGAGTCAGCCACCGACGG SNP = G/C SNP structure (UNICODE) = TTGTAAGTTCSACAGGTTACT Parent 1 SNP sequence = TTGTAAGTTCGACAGGTTACT Parent 2 SNP sequence = TTGTAAGTTCCACAGGTTACT SNP = C/A SNP structure (UNICODE) = CCAGTACAAAMGGGAAGTTAG Parent 1 SNP sequence = CCAGTACAAACGGGAAGTTAG Parent 2 SNP sequence = CCAGTACAAAAGGGAAGTTAG SNP = G/A SNP structure (UNICODE) = CACCTGATGCRACAGGATGCT Parent 1 SNP sequence = CACCTGATGCGACAGGATGCT Parent 2 SNP sequence = CACCTGATGCAACAGGATGCT
Probe for Locus	bags20l05
Locus	k02478
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = AT4g32050/F10N7_130 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CAGCTATACCCCAACAAACCA Right 5' - CGTCGAGTACTACGTGTCCG
Sequence	AV918333
PCR size	444