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GrainGenes Marker Report: k02489

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Locus	k02489
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 209.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20k06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = GTCCTGGGATYTGAAGGAATC Parent 1 SNP sequence = GTCCTGGGATCTGAAGGAATC Parent 2 SNP sequence = GTCCTGGGATTTGAAGGAATC SNP = G/A SNP structure (UNICODE) = CTTCCGTCGARCAACCCAAAC Parent 1 SNP sequence = CTTCCGTCGAGCAACCCAAAC Parent 2 SNP sequence = CTTCCGTCGAACAACCCAAAC SNP = A/G SNP structure (UNICODE) = CAGCTTCATCRAAAGAATCGA Parent 1 SNP sequence = CAGCTTCATCAAAAGAATCGA Parent 2 SNP sequence = CAGCTTCATCGAAAGAATCGA
Probe for Locus	bags20k06
Locus	k02489
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ESTs AU031435(E61570),AU078245(E61570) correspond to a region of the predicted gene.~hypothetical protein [Oryza sativa
Type	PCR
PCR primers	Left 5' - CGAACTAGTGGCAGAGGGAG Right 5' - GATGAAGCTTCCGTAGCCAG
Sequence	BJ463497
PCR size	476