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GrainGenes Marker Report: k02490

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Locus	k02490
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 194.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20l07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 30 ] SNP = T/G SNP structure (UNICODE) = AACCAACATAKCGAAAACCTT Parent 1 SNP sequence = AACCAACATATCGAAAACCTT Parent 2 SNP sequence = AACCAACATAGCGAAAACCTT SNP = C/T SNP structure (UNICODE) = GTGTTAAGACYGTCAGCAGCT Parent 1 SNP sequence = GTGTTAAGACCGTCAGCAGCT Parent 2 SNP sequence = GTGTTAAGACTGTCAGCAGCT SNP structure (UNICODE) = GAGCATGTTAKACCTCTTTAT Parent 1 SNP sequence = GAGCATGTTATACCTCTTTAT Parent 2 SNP sequence = GAGCATGTTAGACCTCTTTAT SNP = G/C SNP structure (UNICODE) = GCTGCAGCCTSTTCTTGAAGC Parent 1 SNP sequence = GCTGCAGCCTGTTCTTGAAGC Parent 2 SNP sequence = GCTGCAGCCTCTTCTTGAAGC SNP = T/C SNP structure (UNICODE) = GCTCTCCATGYTGAGAACTCT Parent 1 SNP sequence = GCTCTCCATGTTGAGAACTCT Parent 2 SNP sequence = GCTCTCCATGCTGAGAACTCT SNP structure (UNICODE) = GATCAAACCGYGAACTCAATG Parent 1 SNP sequence = GATCAAACCGCGAACTCAATG Parent 2 SNP sequence = GATCAAACCGTGAACTCAATG SNP = G/T SNP structure (UNICODE) = CTCAATGACTKGAGCATGTTA Parent 1 SNP sequence = CTCAATGACTGGAGCATGTTA Parent 2 SNP sequence = CTCAATGACTTGAGCATGTTA SNP = T/A SNP structure (UNICODE) = AGGAGGCCCAWTGCAGAAGAT Parent 1 SNP sequence = AGGAGGCCCATTGCAGAAGAT Parent 2 SNP sequence = AGGAGGCCCAATGCAGAAGAT
Probe for Locus	bags20l07
Locus	k02490
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Hypothetical protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - AATGTAGGGTTCCACAAGCG Right 5' - GCTGCTGCAGAGAGGAAACT
Sequence	AV834002
PCR size	360