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GrainGenes Marker Report: k02499

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Locus	k02499
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 321.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags21o12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = TGCCAAACGGRACGGTGCCGA Parent 1 SNP sequence = TGCCAAACGGAACGGTGCCGA Parent 2 SNP sequence = TGCCAAACGGGACGGTGCCGA SNP = C/T SNP structure (UNICODE) = TGAGCGACCGYGTGTATATGT Parent 1 SNP sequence = TGAGCGACCGCGTGTATATGT Parent 2 SNP sequence = TGAGCGACCGTGTGTATATGT SNP = T/C SNP structure (UNICODE) = TCTTCTGCCCYGCCGGAACAT Parent 1 SNP sequence = TCTTCTGCCCTGCCGGAACAT Parent 2 SNP sequence = TCTTCTGCCCCGCCGGAACAT
Probe for Locus	bags21o12
Locus	k02499
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = MAP kinase-like protein [Oryza sativa (japonica cultivar-group)] dbj BAB89473.1 MAP kinase-like protein [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - GATCTAGTCGTCGTCCTCGC Right 5' - CCCCTCCTCCTCTTCTTCAT
Sequence	AV918693
PCR size	412