GrainGenes Marker Report: k02505
Locus
k02505
Type
CAPS
Chromosome
4H
Map
Hv-HNxH602-4H 108.2
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags22p03
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = T/G SNP structure (UNICODE) = CTGCCTTGCGKATCAAGGGGA Parent 1 SNP sequence = CTGCCTTGCGTATCAAGGGGA Parent 2 SNP sequence = CTGCCTTGCGGATCAAGGGGA Recognized sequence for CAPs locus = GATC
Probe for Locus
bags22p03
Locus
k02505
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = autophagy 9 (APG9) [Arabidopsis thaliana] gb AAL91630.1 At2g31260/F16D14.10 [Arabidopsis thaliana]
Type
PCR
PCR primers
Left 5' - CCCTTCGGTTTATTCCGATT
Right 5' - ATCAGGATCAGAAGACGGCA
Sequence
BJ460864
PCR size
427
GrainGenes Marker Report: k02505
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
| |||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
| ||||||||
|
|