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GrainGenes Marker Report: k02516

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Locus	k02516
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 259.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags22l12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = G/A SNP structure (UNICODE) = GGCCCACGAARCTTAGAGGAT Parent 1 SNP sequence = GGCCCACGAAGCTTAGAGGAT Parent 2 SNP sequence = GGCCCACGAAACTTAGAGGAT Recognized sequence for CAPs locus = AGCT
Probe for Locus	bags22l12
Locus	k02516
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative transcription factor [Oryza sativa] gb AAK82454.1 putative transcription factor [Oryza sativa]
Type	PCR
PCR primers	Left 5' - AATCCGTTCTTCCTTTTCGG Right 5' - CAACTTGCAGTCATCGGCTA
Sequence	AV918742
PCR size	406