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GrainGenes Marker Report: k02524

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Locus	k02524
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 97
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags22b22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/G SNP structure (UNICODE) = GCATTCATGCSGCTCATCTTT Parent 1 SNP sequence = GCATTCATGCCGCTCATCTTT Parent 2 SNP sequence = GCATTCATGCGGCTCATCTTT SNP = T/C SNP structure (UNICODE) = GACAAACTAGYCATCAAATGC Parent 1 SNP sequence = GACAAACTAGTCATCAAATGC Parent 2 SNP sequence = GACAAACTAGCCATCAAATGC SNP = C/T SNP structure (UNICODE) = GATGGACACTYGGTAGCAAAA Parent 1 SNP sequence = GATGGACACTCGGTAGCAAAA Parent 2 SNP sequence = GATGGACACTTGGTAGCAAAA
Probe for Locus	bags22b22
Locus	k02524
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = cytochrome c oxidase subunit Vb precursor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTGAAGCAGAAGCAGAAGCA Right 5' - CCAACTGGCATGAGTACCCT
Sequence	AV918751
PCR size	466