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GrainGenes Marker Report: k02528

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Locus	k02528
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 177.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags22l14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = GCTCACTCTCRCGCCGAAGCT Parent 1 SNP sequence = GCTCACTCTCACGCCGAAGCT Parent 2 SNP sequence = GCTCACTCTCGCGCCGAAGCT SNP structure (UNICODE) = TCAAGAAGCARAGCGGAAGTA Parent 1 SNP sequence = TCAAGAAGCAAAGCGGAAGTA Parent 2 SNP sequence = TCAAGAAGCAGAGCGGAAGTA SNP = G/A SNP structure (UNICODE) = TCTTCTTCCCRGGGACGTGGA Parent 1 SNP sequence = TCTTCTTCCCGGGGACGTGGA Parent 2 SNP sequence = TCTTCTTCCCAGGGACGTGGA SNP = T/A SNP structure (UNICODE) = ATGAACAGCAWACTCATCACA Parent 1 SNP sequence = ATGAACAGCATACTCATCACA Parent 2 SNP sequence = ATGAACAGCAAACTCATCACA
Probe for Locus	bags22l14
Locus	k02528
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TATGGTGACACGCAGACACA Right 5' - GAGGCATCCACAAGCTCATC
Sequence	AV918923
PCR size	417