Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02545

[Submit comment/correction]

Locus	k02545
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 133.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags21l05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = T/C SNP structure (UNICODE) = CTTCACCGGGYCTCAGTGCAC Parent 1 SNP sequence = CTTCACCGGGTCTCAGTGCAC Parent 2 SNP sequence = CTTCACCGGGCCTCAGTGCAC Recognized sequence for CAPs locus = GGNCC
Probe for Locus	bags21l05
Locus	k02545
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein T10P11.1 - Arabidopsis thaliana gb AAC78251.1 predicted protein of unknown function [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAATGGCTTCAACAAATGCC Right 5' - CGATAAGAAGGCACAGGCTC
Sequence	AV918632
PCR size	432