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GrainGenes Marker Report: k02573

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Locus	k02573
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 146.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags22f10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = G/C SNP structure (UNICODE) = TACGACGACGSGCAGCCTTGG Parent 1 SNP sequence = TACGACGACGGGCAGCCTTGG Parent 2 SNP sequence = TACGACGACGCGCAGCCTTGG Recognized sequence for CAPs locus = CGCG
Probe for Locus	bags22f10
Locus	k02573
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = cytosolic heat shock protein 90 [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - AACCGTAGCAAGCGTCTGAT Right 5' - CGGTCCTGAGTGGTGAATCT
Sequence	AV918808
PCR size	383