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GrainGenes Marker Report: k02588

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Locus	k02588
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 104.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags22o22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = TGCACTATACRGTAAAAGCCA Parent 1 SNP sequence = TGCACTATACAGTAAAAGCCA Parent 2 SNP sequence = TGCACTATACGGTAAAAGCCA SNP structure (UNICODE) = GTGTACAACTRCTCCCATCAT Parent 1 SNP sequence = GTGTACAACTACTCCCATCAT Parent 2 SNP sequence = GTGTACAACTGCTCCCATCAT SNP = G/T SNP structure (UNICODE) = AACACACATTKTTTTATTCGA Parent 1 SNP sequence = AACACACATTGTTTTATTCGA Parent 2 SNP sequence = AACACACATTTTTTTATTCGA SNP = G/A SNP structure (UNICODE) = ACTTCTTAGARGGAATGTCTT Parent 1 SNP sequence = ACTTCTTAGAGGGAATGTCTT Parent 2 SNP sequence = ACTTCTTAGAAGGAATGTCTT
Probe for Locus	bags22o22
Locus	k02588
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative proteophosphoglycan [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TTACAGGGGTTCACTCGACC Right 5' - AGTGGGTGGTGACCAAGAAG
Sequence	AV834094
PCR size	403