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GrainGenes Marker Report: k02630

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Locus	k02630
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags23l21
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = A/T SNP structure (UNICODE) = GCCTCAATTAWAAGATTGGAA Parent 1 SNP sequence = GCCTCAATTAAAAGATTGGAA Parent 2 SNP sequence = GCCTCAATTATAAGATTGGAA SNP = C/G SNP structure (UNICODE) = CAGGGCATCCSATGTGACAAC Parent 1 SNP sequence = CAGGGCATCCCATGTGACAAC Parent 2 SNP sequence = CAGGGCATCCGATGTGACAAC SNP structure (UNICODE) = CGTGCCATATSAGGTTCAATC Parent 1 SNP sequence = CGTGCCATATCAGGTTCAATC Parent 2 SNP sequence = CGTGCCATATGAGGTTCAATC SNP = C/T SNP structure (UNICODE) = ATGCTCGTCTYGCCTCGAGAA Parent 1 SNP sequence = ATGCTCGTCTCGCCTCGAGAA Parent 2 SNP sequence = ATGCTCGTCTTGCCTCGAGAA SNP = A/G SNP structure (UNICODE) = CTAGCTATCTRAAGCATGTCT Parent 1 SNP sequence = CTAGCTATCTAAAGCATGTCT Parent 2 SNP sequence = CTAGCTATCTGAAGCATGTCT
Probe for Locus	bags23l21
Locus	k02630
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = homeobox transcription factor Hox7-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCTCTCCAATCTCCAGCAAC Right 5' - CCCAACAGACTCAAGCTTCC
Sequence	AV834475
PCR size	438