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GrainGenes Marker Report: k02658

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Locus	k02658
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 103.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags24n16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/A SNP structure (UNICODE) = CATGGTGAACMGGKGAGTCTT Parent 1 SNP sequence = CATGGTGAACCGGGGAGTCTT Parent 2 SNP sequence = CATGGTGAACAGGTGAGTCTT Recognized sequence for CAPs locus = CCGG
Probe for Locus	bags24n16
Locus	k02658
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative protein kinase [Oryza sativa (japonica cultivar-group)] dbj BAB89924.1 putative protein kinase [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - GCAGCTAGGAAGGAACATGC Right 5' - AGTGATATTTCGCTGGGCAC
Sequence	BJ465702
PCR size	360