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GrainGenes Marker Report: k02663

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Locus	k02663
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 69.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags26d01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 30 ] SNP = G/C SNP structure (UNICODE) = GGATTGCTTGSACATACCGAG Parent 1 SNP sequence = GGATTGCTTGGACATACCGAG Parent 2 SNP sequence = GGATTGCTTGCACATACCGAG SNP = C/T SNP structure (UNICODE) = TCTGCTTTGTYGGTGTCATCT Parent 1 SNP sequence = TCTGCTTTGTCGGTGTCATCT Parent 2 SNP sequence = TCTGCTTTGTTGGTGTCATCT SNP structure (UNICODE) = AGACCAGTGAYGTTCAGCAAT Parent 1 SNP sequence = AGACCAGTGACGTTCAGCAAT Parent 2 SNP sequence = AGACCAGTGATGTTCAGCAAT SNP = A/T SNP structure (UNICODE) = CAGAAAGTCGWCCATGAGGGA Parent 1 SNP sequence = CAGAAAGTCGACCATGAGGGA Parent 2 SNP sequence = CAGAAAGTCGTCCATGAGGGA SNP = T/C SNP structure (UNICODE) = CCTACGCCTTYCCCTTCTTTC Parent 1 SNP sequence = CCTACGCCTTTCCCTTCTTTC Parent 2 SNP sequence = CCTACGCCTTCCCCTTCTTTC SNP structure (UNICODE) = GCGGCTCGCTYTGAAGGTGTC Parent 1 SNP sequence = GCGGCTCGCTTTGAAGGTGTC Parent 2 SNP sequence = GCGGCTCGCTCTGAAGGTGTC SNP = C/G SNP structure (UNICODE) = CTGGCTGACTSAGAAAAAGGA Parent 1 SNP sequence = CTGGCTGACTCAGAAAAAGGA Parent 2 SNP sequence = CTGGCTGACTGAGAAAAAGGA SNP = A/G SNP structure (UNICODE) = CTGAAACCCTRGATGCGGCTC Parent 1 SNP sequence = CTGAAACCCTAGATGCGGCTC Parent 2 SNP sequence = CTGAAACCCTGGATGCGGCTC
Probe for Locus	bags26d01
Locus	k02663
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative DNA-dependent ATPase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCCTGCGTAGCACAGAACAG Right 5' - CACCCCCGATGAACTTAGAA
Sequence	BJ467224
PCR size	392