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GrainGenes Marker Report: k02707

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Locus	k02707
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 289.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags28c17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = BstUI SNP = G/A SNP structure (UNICODE) = TCAACTCCGCRNACGACACTT Parent 1 SNP sequence = TCAACTCCGCGAACGACACTT Parent 2 SNP sequence = TCAACTCCGCANACGACACTT Recognized sequence for CAPs locus = CGCG SNP = G/C SNP structure (UNICODE) = TCGATTCCTCSCGCATCTATA Parent 1 SNP sequence = TCGATTCCTCGCGCATCTATA Parent 2 SNP sequence = TCGATTCCTCCCGCATCTATA
Probe for Locus	bags28c17
Locus	k02707
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0458E05.24 [Oryza sativa (japonica cultivar-group)] dbj BAC05624.1 P0458E05.24 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACAAATTAAGGCGCCCTCT Right 5' - CTGATGAGGCGGATGATGT
Sequence	BJ465984
PCR size	461