Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02730

[Submit comment/correction]

Locus	k02730
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 235.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags27o20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = GTTGATCTAAMGGCAGATCCA Parent 1 SNP sequence = GTTGATCTAAAGGCAGATCCA Parent 2 SNP sequence = GTTGATCTAACGGCAGATCCA SNP = C/T SNP structure (UNICODE) = GGTCGTCTGAYGGAGGACTGT Parent 1 SNP sequence = GGTCGTCTGACGGAGGACTGT Parent 2 SNP sequence = GGTCGTCTGATGGAGGACTGT SNP = T/G SNP structure (UNICODE) = CTCTTTCGGGKTCATCGCCAG Parent 1 SNP sequence = CTCTTTCGGGTTCATCGCCAG Parent 2 SNP sequence = CTCTTTCGGGGTCATCGCCAG
Probe for Locus	bags27o20
Locus	k02730
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAR20713.1 At4g13220 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GCTGAAATCGCACAAGTGAA Right 5' - CCAAAAGGTGGAACCAGAGA
Sequence	BJ465928
PCR size	359