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GrainGenes Marker Report: k02784

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Locus	k02784
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 40.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags29i09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/C SNP structure (UNICODE) = CGCGCGTGAGSCCCCCCGGCT Parent 1 SNP sequence = CGCGCGTGAGGCCCCCCGGCT Parent 2 SNP sequence = CGCGCGTGAGCCCCCCCGGCT Recognized sequence for CAPs locus = GGCC
Probe for Locus	bags29i09
Locus	k02784
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = beta-glucosidase [Oryza sativa]
Type	PCR
PCR primers	Left 5' - GACAGGTAGCAAGCCGTTGT Right 5' - TCCAAGTGGACCAGTGTCTG
Sequence	AV918262
PCR size	362