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GrainGenes Marker Report: k02793

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Locus	k02793
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 128.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags30l22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = AGTAAGAAACRTCAGCTAATA Parent 1 SNP sequence = AGTAAGAAACATCAGCTAATA Parent 2 SNP sequence = AGTAAGAAACGTCAGCTAATA SNP = T/C SNP structure (UNICODE) = GCTTCTTCTAYGGTTGCATAT Parent 1 SNP sequence = GCTTCTTCTATGGTTGCATAT Parent 2 SNP sequence = GCTTCTTCTACGGTTGCATAT SNP = C/T SNP structure (UNICODE) = ATCTAGGATTYATCCCTTCCT Parent 1 SNP sequence = ATCTAGGATTCATCCCTTCCT Parent 2 SNP sequence = ATCTAGGATTTATCCCTTCCT
Probe for Locus	bags30l22
Locus	k02793
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0534A03.25 [Oryza sativa (japonica cultivar-group)] dbj BAC57733.1 RNA recognition motif (RRM)-containing protein-like [Oryza sativa
Type	PCR
PCR primers	Left 5' - ACCGTCAAGTGAACCACACA Right 5' - CAAGGTCCCTTCCAAGACAA
Sequence	BJ468014
PCR size	405