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GrainGenes Marker Report: k02796

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Locus	k02796
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 303.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags31a22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = T/A SNP structure (UNICODE) = AAATAACTTGWGTCATGTTCA Parent 1 SNP sequence = AAATAACTTGTGTCATGTTCA Parent 2 SNP sequence = AAATAACTTGAGTCATGTTCA Recognized sequence for CAPs locus = GANTC
Probe for Locus	bags31a22
Locus	k02796
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Similar to gb U43629 integral membrane protein from Beta vulgaris and is a member of the sugar transporter family
Type	PCR
PCR primers	Left 5' - GCGGAAGAAGAAAGATGCCT Right 5' - TGAAGGAGATCAAGAACGGC
Sequence	BJ466183
PCR size	413