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GrainGenes Marker Report: k02830

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Locus	k02830
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 233
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags30n17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = GGGCATCCTCRAGCCTTGCCC Parent 1 SNP sequence = GGGCATCCTCAAGCCTTGCCC Parent 2 SNP sequence = GGGCATCCTCGAGCCTTGCCC SNP structure (UNICODE) = TTGCCCTGGARTCCTCAAGCT Parent 1 SNP sequence = TTGCCCTGGAATCCTCAAGCT Parent 2 SNP sequence = TTGCCCTGGAGTCCTCAAGCT
Probe for Locus	bags30n17
Locus	k02830
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)] gb AAN09867.1 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAAGAATGCACGACACGACT Right 5' - TCTTTGCCAAGACCATCTCC
Sequence	BJ468046
PCR size	482