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GrainGenes Marker Report: k02857

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Locus	k02857
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 260.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags29k01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 37 ] SNP = T/G SNP structure (UNICODE) = CTCATAAAGTKGACATTCAGG Parent 1 SNP sequence = CTCATAAAGTTGACATTCAGG Parent 2 SNP sequence = CTCATAAAGTGGACATTCAGG SNP = A/C SNP structure (UNICODE) = AAGCTTAAGAMAGACAAACTC Parent 1 SNP sequence = AAGCTTAAGAAAGACAAACTC Parent 2 SNP sequence = AAGCTTAAGACAGACAAACTC SNP = A/G SNP structure (UNICODE) = CTCCTCATCARTCCCAATGGC Parent 1 SNP sequence = CTCCTCATCAATCCCAATGGC Parent 2 SNP sequence = CTCCTCATCAGTCCCAATGGC SNP structure (UNICODE) = CAGGAGATGTKACAAACAAAT Parent 1 SNP sequence = CAGGAGATGTTACAAACAAAT Parent 2 SNP sequence = CAGGAGATGTGACAAACAAAT SNP = G/A SNP structure (UNICODE) = TCATCGTCCCRAGAATCGATC Parent 1 SNP sequence = TCATCGTCCCGAGAATCGATC Parent 2 SNP sequence = TCATCGTCCCAAGAATCGATC SNP structure (UNICODE) = ACTTGCCGGCRGAGTATCAGG Parent 1 SNP sequence = ACTTGCCGGCAGAGTATCAGG Parent 2 SNP sequence = ACTTGCCGGCGGAGTATCAGG SNP = T/C SNP structure (UNICODE) = TGAGTGCTTCYTTCTCAGGCT Parent 1 SNP sequence = TGAGTGCTTCTTTCTCAGGCT Parent 2 SNP sequence = TGAGTGCTTCCTTCTCAGGCT SNP = G/T SNP structure (UNICODE) = GGCTAACATCKACACTGAAAG Parent 1 SNP sequence = GGCTAACATCGACACTGAAAG Parent 2 SNP sequence = GGCTAACATCTACACTGAAAG SNP structure (UNICODE) = TGAAAGGCCCRACAAGTGTGA Parent 1 SNP sequence = TGAAAGGCCCAACAAGTGTGA Parent 2 SNP sequence = TGAAAGGCCCGACAAGTGTGA SNP = A/T SNP structure (UNICODE) = AAACAAATCAWCCTACATTTC Parent 1 SNP sequence = AAACAAATCAACCTACATTTC Parent 2 SNP sequence = AAACAAATCATCCTACATTTC
Probe for Locus	bags29k01
Locus	k02857
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GGTGTGCTCGCATTAAGGTAA Right 5' - AGAAGAGAAGAGAGAAGCCCG
Sequence	BJ467742
PCR size	417