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GrainGenes Marker Report: k02929

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Locus	k02929
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 233
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags31e24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BanII SNP = T/C SNP structure (UNICODE) = AGGAAGGGCTYTCGACTCGGA Parent 1 SNP sequence = AGGAAGGGCTTTCGACTCGGA Parent 2 SNP sequence = AGGAAGGGCTCTCGACTCGGA Recognized sequence for CAPs locus = GRGCYC
Probe for Locus	bags31e24
Locus	k02929
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0423A12.23 [Oryza sativa (japonica cultivar-group)] dbj BAB64184.1 P0492G09.4 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CATTGAGCAGCAGATGGAGA Right 5' - ATGCACACTGAGCAGCCTAA
Sequence	BJ466241
PCR size	391