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GrainGenes Marker Report: k02933

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Locus	k02933
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 234
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags32a01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HapII SNP = A/G SNP structure (UNICODE) = GCGCTTYCCCRGATCCCTTAG Parent 1 SNP sequence = GCGCTTTCCCAGATCCCTTAG Parent 2 SNP sequence = GCGCTTCCCCGGATCCCTTAG Recognized sequence for CAPs locus = CCGG SNP = T/C SNP structure (UNICODE) = GAGTAACCGCYGGCATTGTTG Parent 1 SNP sequence = GAGTAACCGCTGGCATTGTTG Parent 2 SNP sequence = GAGTAACCGCCGGCATTGTTG
Probe for Locus	bags32a01
Locus	k02933
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Transcription factor [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TAGATAAGACGGGGAAGGCA Right 5' - CGAATCAACACATGGAGACG
Sequence	BJ466411
PCR size	388