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GrainGenes Marker Report: k02939

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Locus	k02939
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 143.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags33h05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/G SNP structure (UNICODE) = GCTGGAAATTKTTCCACGGGG Parent 1 SNP sequence = GCTGGAAATTTTTCCACGGGG Parent 2 SNP sequence = GCTGGAAATTGTTCCACGGGG SNP = A/T SNP structure (UNICODE) = TGGCAATGCTWTGCCGGCTCA Parent 1 SNP sequence = TGGCAATGCTATGCCGGCTCA Parent 2 SNP sequence = TGGCAATGCTTTGCCGGCTCA
Probe for Locus	bags33h05
Locus	k02939
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = metal transporter, putative (ZIP6) [Arabidopsis thaliana] sp O64738 ZIP6_ARATH Zinc transporter 6, chloroplast precursor (ZRT/IRT-like prote
Type	PCR
PCR primers	Left 5' - GCGCGCACACTGTATAACAT Right 5' - CAAAGACGCTCTACAAGGGC
Sequence	BJ466679
PCR size	350