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GrainGenes Marker Report: k02981

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Locus	k02981
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 239.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags34d17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = C/A SNP structure (UNICODE) = AACTAATCAGMTTAACAATTG Parent 1 SNP sequence = AACTAATCAGCTTAACAATTG Parent 2 SNP sequence = AACTAATCAGATTAACAATTG Recognized sequence for CAPs locus = AGCT
Probe for Locus	bags34d17
Locus	k02981
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative 60S ribosomal protein L7 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATGTCACAGCGTCACCACAT Right 5' - TCCTCAAGAAGAAGCCCGTA
Sequence	BJ549862
PCR size	354