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GrainGenes Marker Report: k02989

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Locus	k02989
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 182.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags33j12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BanII SNP = C/T SNP structure (UNICODE) = CCAGAGGGAGYTCCTATACCC Parent 1 SNP sequence = CCAGAGGGAGCTCCTATACCC Parent 2 SNP sequence = CCAGAGGGAGTTCCTATACCC Recognized sequence for CAPs locus = GRGCYC
Probe for Locus	bags33j12
Locus	k02989
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phospholipase D delta / PLD delta (PLDDELTA) [Arabidopsis thaliana] sp Q9C5Y0 PDD1_ARATH Phospholipase D delta (AtPLDdelta) (PLD delta)
Type	PCR
PCR primers	Left 5' - ATCCTACTGCCCAAGCAAAA Right 5' - CAGGATTACATCGAGGCGAC
Sequence	BJ466718
PCR size	439