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GrainGenes Marker Report: k03006

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Locus	k03006
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 146.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags34j05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = C/T SNP structure (UNICODE) = CTCAGCCAAGYTCTCCCTAAC Parent 1 SNP sequence = CTCAGCCAAGCTCTCCCTAAC Parent 2 SNP sequence = CTCAGCCAAGTTCTCCCTAAC Recognized sequence for CAPs locus = AGCT
Probe for Locus	bags34j05
Locus	k03006
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative coatomer protein gamma 2-subunit [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCGAAAGTTCCCCTGTGTAA Right 5' - GTGGCAAGTCTGTGGACCTT
Sequence	BJ466858
PCR size	380