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GrainGenes Marker Report: k03010

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Locus	k03010
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 171.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags35i04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/A SNP structure (UNICODE) = TCCCCATAAGMATCATCCTCC Parent 1 SNP sequence = TCCCCATAAGCATCATCCTCC Parent 2 SNP sequence = TCCCCATAAGAATCATCCTCC Recognized sequence for CAPs locus = GANTC
Probe for Locus	bags35i04
Locus	k03010
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = cellulase (EC 3.2.1.4) F19H22.110 - Arabidopsis thaliana emb CAB38821.1 putative endo-1, 4-beta-glucanase [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGCGCAGGATAAACTGCCTA Right 5' - CCCCTAGGAAGAGGATGGAC
Sequence	BJ467008
PCR size	442