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GrainGenes Marker Report: k03026

Locus	k03026
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 179.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags33m15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DraIII SNP = G/C SNP structure (UNICODE) = TACACCTTGTSGATTAATATA Parent 1 SNP sequence = TACACCTTGTGGATTAATATA Parent 2 SNP sequence = TACACCTTGTCGATTAATATA Recognized sequence for CAPs locus = CACNNNGTG
Probe for Locus	bags33m15
Locus	k03026
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0103I08.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATACTGCGGGCAGCTTACAT Right 5' - ACTGGAGGATGAATTGGCTG
Sequence	BJ466758
PCR size	386