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GrainGenes Marker Report: k03031

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Locus	k03031
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags34m12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = G/A SNP structure (UNICODE) = GTACGTCTTCRTACCGGATTC Parent 1 SNP sequence = GTACGTCTTCGTACCGGATTC Parent 2 SNP sequence = GTACGTCTTCATACCGGATTC SNP = A/G SNP structure (UNICODE) = CCTAGTTTTTRTAGTTAGCTA Parent 1 SNP sequence = CCTAGTTTTTATAGTTAGCTA Parent 2 SNP sequence = CCTAGTTTTTGTAGTTAGCTA SNP structure (UNICODE) = TTTATTCTGGRATCCTTATTT Parent 1 SNP sequence = TTTATTCTGGGATCCTTATTT Parent 2 SNP sequence = TTTATTCTGGAATCCTTATTT SNP = T/A SNP structure (UNICODE) = TTCGCTGGATWCTAGGACTCC Parent 1 SNP sequence = TTCGCTGGATTCTAGGACTCC Parent 2 SNP sequence = TTCGCTGGATACTAGGACTCC SNP structure (UNICODE) = ATACCACTCARAATCTAGGTC Parent 1 SNP sequence = ATACCACTCAGAATCTAGGTC Parent 2 SNP sequence = ATACCACTCAAAATCTAGGTC
Probe for Locus	bags34m12
Locus	k03031
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = metallo-beta-lactamase family protein [Arabidopsis thaliana] gb AAM13147.1 putative protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TAAGCCGCTTTGGACCTTTA Right 5' - TTTTCAACAGGGACCAGGAC
Sequence	BJ466884
PCR size	460