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GrainGenes Marker Report: k03033

Locus	k03033
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 118
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags35c23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = C/T SNP structure (UNICODE) = CAACCATCAGYTGGCTACCAA Parent 1 SNP sequence = CAACCATCAGCTGGCTACCAA Parent 2 SNP sequence = CAACCATCAGTTGGCTACCAA Recognized sequence for CAPs locus = AGCT
Probe for Locus	bags35c23
Locus	k03033
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTCTCTCCAAAGCCGAAACA Right 5' - GGGGCTAGATGCAGTCGTTA
Sequence	AV921451
PCR size	353