GrainGenes Marker Report: k03035
Locus
k03035
Type
CAPS
Chromosome
5H
Map
Hv-HNxH602-5H 255.1
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags35n03
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = T/C SNP structure (UNICODE) = TGAATATCAGYTGGCATTTCC Parent 1 SNP sequence = TGAATATCAGTTGGCATTTCC Parent 2 SNP sequence = TGAATATCAGCTGGCATTTCC Recognized sequence for CAPs locus = AGCT
Probe for Locus
bags35n03
Locus
k03035
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative sugar transporter protein [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AGGCCATCTCCTTCAGGTTT
Right 5' - CGATGATGCCCTAGGAGAAA
Sequence
BJ467060
PCR size
350
GrainGenes Marker Report: k03035
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