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GrainGenes Marker Report: k03045

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Locus	k03045
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 122.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags35d02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/T SNP structure (UNICODE) = ATCAGTTTATWTGCCTCGTGT Parent 1 SNP sequence = ATCAGTTTATATGCCTCGTGT Parent 2 SNP sequence = ATCAGTTTATTTGCCTCGTGT SNP = C/T SNP structure (UNICODE) = AATAAAATTGYCTTATTTTTG Parent 1 SNP sequence = AATAAAATTGCCTTATTTTTG Parent 2 SNP sequence = AATAAAATTGTCTTATTTTTG SNP = T/C SNP structure (UNICODE) = GATGTAGAAGYTGGAGAGCAT Parent 1 SNP sequence = GATGTAGAAGTTGGAGAGCAT Parent 2 SNP sequence = GATGTAGAAGCTGGAGAGCAT
Probe for Locus	bags35d02
Locus	k03045
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DNA-DIRECTED RNA POLYMERASE II 19 KD POLYPEPTIDE (RNA POLYMERASE II SUBUNIT 5)
Type	PCR
PCR primers	Left 5' - ACAAGAAACGCACACGACAC Right 5' - AGCGCCTACAAAGACCAGAA
Sequence	BJ466953
PCR size	353